Computational Model Library

Our mission is to help computational modelers develop, document, and share their computational models in accordance with community standards and good open science and software engineering practices. Model authors can publish their model source code in the Computational Model Library with narrative documentation as well as metadata that supports open science and emerging norms that facilitate software citation, computational reproducibility / frictionless reuse, and interoperability. Model authors can also request private peer review of their computational models. Models that pass peer review receive a DOI once published.

All users of models published in the library must cite model authors when they use and benefit from their code.

Please check out our model publishing tutorial and feel free to contact us if you have any questions or concerns about publishing your model(s) in the Computational Model Library.

Displaying 10 of 343 results for "Ali Termos" clear search

Cultural Group Selection of Sustainable Institutions

Timothy Waring Paul Smaldino Sandra H Goff | Published Wednesday, June 10, 2015 | Last modified Tuesday, August 04, 2015

We develop a spatial, evolutionary model of the endogenous formation and dissolution of groups using a renewable common pool resource. We use this foundation to measure the evolutionary pressures at different organizational levels.

This model simulates networking mechanisms of an empirical social network. It correlates event determinants with place-based geography and social capital production.

A Simulation of Entrepreneurial Spawning

Mark Bagley | Published Wednesday, June 08, 2016 | Last modified Friday, June 30, 2017

Industrial clustering patterns are the result of an entrepreneurial process where spinoffs inherit the ideas and attributes of their parent firms. This computational model maps these patterns using abstract methodologies.

00 PSoup V1.22 – Primordial Soup

Garvin Boyle | Published Thursday, April 13, 2017

PSoup is an educational program in which evolution is demonstrated, on the desk-top, as you watch. Blind bugs evolve sophisticated heuristic search algorithms to be the best at finding food fast.

This model is intended to support oak tree management by representing the dynamics of oaks in multiple life stages and their competitors and consumers. This is implemented using a differential equation-based theoretical model representing three life stages of oaks: seedlings, juveniles, and adults. It includes the population dynamics of seedlings transitioning to juveniles, juveniles to adults, and adults producing new seedlings, as well as survival rates for each of the stages. It also includes a model of competition for light and water within seedlings and between seedlings and annual grasses. Finally, there is a predation term representing herbivores eating seedlings and grasses, using a Holling Type II (satiating) response with interference for predators and a death rate which depends on the resource extraction rate.

This model aims to study the dynamic propagation of individual behaviour within social networks, focusing on how normative expectations (NE) and experiential expectations (EE) jointly influence behavioural decisions. It also explores the long-term effects of different intervention scenarios (such as enhancing visibility, considering indirect social links, and education) on behavioural propagation patterns and the overall behaviour of the group.
The model was developed in NetLogo 6.4. It generates simulated groups based on large-scale survey data, utilizing NetLogo’s CSV, Table, and Matrix extensions. The model also employs the NW extension to enable network analysis functionality.
The model is designed for research “Shaping social norms to promote individual response behavior in public crises: An agent-based modeling approach” in Journal of Cleaner Production, Volume 554, 8 April 2026, 148014
https://doi.org/10.1016/j.jclepro.2026.148014

Charcoal Record Simulation Model (CharRec)

Grant Snitker | Published Monday, November 16, 2015 | Last modified Thursday, September 30, 2021

This model (CharRec) creates simulated charcoal records, based on differing natural and anthropogenic patterns of ignitions, charcoal dispersion, and deposition.

This model is designed to address the following research question: How does the amount and topology of intergroup cultural transmission modulate the effect of local group extinction on selectively neutral cultural diversity in a geographically structured population? The experimental design varies group extinction rate, the amount of intergroup cultural transmission, and the topology of intergroup cultural transmission while measuring the effects of local group extinction on long-term cultural change and regional cultural differentiation in a constant-size, spatially structured population. The results show that for most of the intergroup social network topologies tested here, increasing the amount of intergroup cultural transmission (similar to increasing gene flow in a genetic model) erases the negative effect of local group extinction on selectively neutral cultural diversity. The stochastic (i.e., preference attachment) network seems to stand out as an exception.

Linear Threshold

Kaushik Sarkar | Published Saturday, November 03, 2012 | Last modified Saturday, April 27, 2013

NetLogo implementation of Linear Threshold model of influence propagation.

This agent-based model simulates the interactions between smallholder farming households, land-use dynamics, and ecosystem services in a rural landscape of Eastern Madagascar. It explores how alternative agricultural practices —shifting agriculture, rice cultivation, and agroforestry—combined with varying levels of forest protection, influence food production, food security, dietary diversity, and forest biodiversity over time. The landscape is represented as a grid of spatially explicit patches characterized by land use, ecological attributes, and regeneration dynamics. Agents make yearly decisions on land management based on demographic pressures, agricultural returns, and institutional constraints. Crop yields are affected by stochastic biotic and abiotic disruptions, modulated by local ecosystem regulation functions. The model additionally represents foraging as a secondary food source and pressure on biodiversity. The model supports the analysis of long-term trade-offs between agricultural productivity, human nutrition, and conservation under different policy and land-use scenarios.

Displaying 10 of 343 results for "Ali Termos" clear search

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